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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … born with a lot of different birth defects of my skeletal system. So I was missing bones and I had to have a lot of … there wasn’t much infrastructure available, especially to researchers just starting out as they’re trying to form …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … (PNAS). Switchgrass, Panicum virgatum , is a widespread, perennial grass in North America that has been the target of … of genomic, quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X and …
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Salt tolerance of two perennial grass Brachypodium sylvaticum accessions
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … it’s like a perfect storm in terms of fundamental knowledge and enabling technology, but interesting biology and a … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … of molecular responses to natural drought stress in Panicum hallii . Nature Communications 9: 5213. Huang, P et al. … & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology 30: 555-561. The …
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Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits
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A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass
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Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … high altitude! And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more … nature does this. The more well-known secondary metabolism systems are the “Non-Ribosomal Peptide Synthetases” or …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was …
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