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Clades of huge phages from across Earth’s ecosystems
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … that showcase our collaborations and capabilities to enable great science that will help solve energy and … the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy …
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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to provide guidance on the Institute’s strategic, … the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We …
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Diversity of cytosine methylation across the fungal tree of life
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … 500,000 existing genomes available at that time. “Looking across the tree of life, it’s striking how many uncultivated … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British … , or leave us a review on Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … aspects of the project. Sarah:  You all hit a big milestone getting the manuscript describing the atlas published in  …
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