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… lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … In this episode: the software evolution that made metagenome assemblies like this possible. …

… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — … Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … the critical roles of metabolites in living systems, particularly as they relate to DOE missions in the … but highly recommend using the workflow in  GNPS2 .   …

… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: … to expand the JGI’s portfolio of user companies. Now the Department of Energy is uniting National Labs and industry, … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and …

… current and future developments, and how the JGI can be part of that space.   …

… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … FICUS program to JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular …

… out. And I gave you a little introduction during my intro part of the first one that you were on. But that’s not … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … in this hypersaline environment, which can range from 8% to 28% salinity. We have toxic metals, so these concentrations …

… In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … by Mária Džunková, postdoctoral researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …

… work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … giant viruses. In a new review, researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …