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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: … Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal (Mycocosm) Algal (Phycocosm) … In general, data …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … not enough time and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality …
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CSP Large Scale Call
… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial communities, global carbon …
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie … Many fungi have beneficial symbiotic relationships with plants and bacteria; in many instances, fungal physiology is …
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Analysis of Leaf and Root Transcriptomes of Soil-Grown Avena barbata Plants
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome …
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Partners
The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve … with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the …
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Plant compartment and genetic variation drive microbiome composition in switchgrass roots
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