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Natural Prodcast Episode 14: Nigel Mouncey
… 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … in-person part here at the integrative genomics building, Berkeley Lab, our home.  DAN: Oh, I haven’t heard anything …
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Metabolomics
… systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms …
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Data Policy
… of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support … Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically … project level to expedite the change in data policy. Data from projects for which JGI has not yet received samples as …
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Their findings …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has generated a …
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Gene Expression: From On-Off Switch to Dial
Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Researchers … area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. … Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is … DNA modifications (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at the University …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory — with a desire to understand …
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Insights into bilaterian evolution from three spiralian genomes
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the  DOE …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… in its environment, this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). In their …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a scientific … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with … that help to explain their work and its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual …
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