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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … some of these really interesting molecules, oftentimes much more efficiently than we can in the lab. And so that's how I … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or …
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DOE JGI Interns Share Their Summer Experiences
Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time … analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … coming out of that conference, and there should be a few more in the feed, that I’m releasing along with this one, at … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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Natural Prodcast Episode 1: The Primer, Part 1
Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … even though the science in that Facebook post is probably more than a little fuzzy. The natural products – or … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … cool stuff with cool bacteria that I’m fascinated to learn more about. He works with methylotrophs, which are a group … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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User Advisory Committees
Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … to say it’s so awesome! For those of you want to understand more about natural products and drug discovery, or the … early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … within, say, the sponges or other things. And we know lots more about microbiomes and symbionts that live with other … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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The More the Merrier: Making the Case for Plant Pan-genomes
… evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …
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DOE JGI Metagenome Workflow
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