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DOE Metrics
… and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … 123.993 175% 2,164 1,656 76.5% ††† † Operational Goal = 89 days; Actual Operation = 76 days due to shelter in place …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … a fellow Berkeley professor from the De­partments of Earth and Planetary Science and Environmental Science, …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has … JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements …
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building … to clean out the building.  We don’t want to just throw everything into the landfill, we need to be able to divert …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
If a tree falls in the forest — whether or not anyone registers the sound — one thing is for sure: there are lots of … in cooperation to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid … diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our … Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the … here . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced … when applying to the FICUS call. (Feb. 21, 2024) More JGI webinars below …
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