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Data Policy
… the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … of data to support their use by those generating data. The JGI Data Policy applies to research data and analysis … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe they … questions or comments, you can contact us on Twitter at @JGI or @danudwary , or by email to jgi[email protected] . We’d …
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Natural Prodcast Episode 14: Nigel Mouncey
… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, of … using these together along with all of our computational tools to really build out much more of an integrative …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … its importance to the DOE mission, switchgrass is among the JGI Flagship Plants . Since 2007, the JGI has been working … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses growing …
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Webinar: Introducing the BioSANS capability
… the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain access to the … Scattering (BioSANS) instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following … GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed …
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of … Preparation of formal Statement of Work (project roadmap) Users must prepare Materials (Samples) for Submission … JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials are received, your Project Manager …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Natural Prodcast Episode 12: Nadine Ziemert
… was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … more into the meta genome mining. We started to build the tools for natural product researchers that easily can … projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, …
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