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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … they deserve. They are so exciting. I get frustrated. Like microbiomes  – you know how that’s a big deal now. You go to … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …
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Partners
… The JGI leverages its existing partnerships and develops others providing complementary … Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … Collaborations for User Science calls. These documents have been shared with permission from the PIs who drafted them.  …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in natural product reports … in collaboration with other people, lake sediments. We have microbiomes from different organisms, including the human …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large … No. DE-AC02-05CH11231. The work conducted by the National Microbiome Data Collaborative ( https://ror.org/05cwx3318 ) …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS … about the general review process or get details on the internal synthetic biology review process .  …
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Natural Prodcast Episode 22: Alison Narayan
… Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin … And with your background, this is pretty fun. We’ve been talking with a lot of people who actually have been …
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells … uncultivated Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly …
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Secondary Metabolites Program
… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. Studying … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …
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