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Natural Prodcast Episode 20: Brian Bachmann
… you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and I’ll … It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a … is a bifunctional decarboxylase from the everninomicin gene cluster.” Brian’s review on  “Fixing the Unfixable: The …
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Partners
… The JGI leverages its existing partnerships and develops others … with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this advancement holds the potential to … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fungal & Algal Program
… on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant biomass. These abilities are crucial for sustainable …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … function across the phylogeny — and link these into our DOE crop plants, so we can learn from evolution that has …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Natural Prodcast Episode 22: Alison Narayan
… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … perfect timing for an October podcast release. I hope that doesn’t get me canceled.The monthly schedule seems to be … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …
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CSP Large Scale Call
… biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research (BER) program … that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals … will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data usage by the …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … is critical to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, … explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … for Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Vision, challenges and opportunities for a Plant Cell Atlas
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Toward a Data Infrastructure for the Plant Cell Atlas.
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