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Natural Prodcast Episode 15: Katherine Duncan
… has been really, really fun. Alison Takemura: And then does that also– well, I guess the question really is, do … gene clusters of those.And they’re just like nothing in databases that currently exist. We looked at chemistry, so … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … What is beautiful for natural products is nature! Nature does this sort of – if you think of nature as a scientist, … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the … optimization of cell- and cell free-based expression platforms, tools and data for deciphering regulatory … sigma factor-target pairs twofold. We are also utilizing DNA-Affinity Purification (DAP) sequencing to express …
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Natural Prodcast Episode 17: Cassandra Quave
… people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very … that is often done, where we’re really just looking at DNA sequences, and we don’t always know necessarily or pay … And just because you do a field study in a location doesn’t mean that you’re going to have this massive economic …
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Partnerships: Myco-Ed
… the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose … responsibility and accountability Promote utilization of JGI products and services while nurturing a fresh cohort of …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … questions or comments, you can contact us on Twitter at @JGI or @danudwary , or by email to jgi[email protected] . We’d …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief … Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers …
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Partners
… The JGI leverages its existing partnerships and develops others … the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and … capabilities.    Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell … work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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FICUS Overview
… increasingly collaborative and multidisciplinary nature of DOE mission science projects, this initiative aims to … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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