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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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Natural Prodcast Episode 10: A Primer on Genome Mining
… now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … problematic in a case where we have all the sequence data but none of the chemical data. So in meta-genomic …
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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User Support
Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and … During this time, your Project Manager will: Coordinate JGI data analysts and other technical experts Track, monitor and …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary …
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Natural Prodcast Episode 22: Alison Narayan
… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … off– JACKIE WINTER: No. ALISON NARAYAN: Often, they’re abbreviated too from alpha ketoglutarate to just AKGs. In my … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …
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