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Metabolomics Program
… molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function … imaged and sampled.  Combining collected metabolomics data with genomics, transcriptomics, imaging, and other data …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the …
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CSP Large Scale Call
… for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of … delay processing, while samples that are of insufficient quality or quantity will preclude approval for processing. …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … the publication date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence Database … indicates the data should be publicly released. Over the next several weeks, the JGI will be in contact with JGI PIs …
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Partnerships: Myco-Ed
… train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an …
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Next generation sequencing data of a defined microbial mock community
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in … and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day joint meeting …
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How to Submit Sequencing Samples
… protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting material is one of the greatest … Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for …
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Offerings & Capabilities
… capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , … phenotypic, metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To … in strain engineering and functional assays and supporting new methodologies to enhance the integration of various data …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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