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Frequently Asked Questions: Project Management
… can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online using the …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal … Many of the submissions are done using web-based forms.   To view the proposal templates, go to the proposal … don’t already have an account) and click the “Begin” button for the call you are interested in. All proposals must be …
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Biases in genome reconstruction from metagenomic data
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with …
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Offerings & Capabilities
… needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell analyses and …
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Homepage
… Our homepage video includes external footage from: University of Delaware; Laura.Selbmann©PNRA. All the sampling activities in Antarctica have been performed in the frame of italian expeditions of the Italian National Program for Antarctic Researches (PNRA),  funded by the Italian …
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Publication Policy
… research project are appropriately recognized and credited for their work, while also adhering to the authorship … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … the PI. We currently use the ‘Base Modification Analysis’ tool within PacBio SMRT link, which works well for 6mA and …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … address some of the most pressing challenges of our time. For more information, please visit  …
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