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Additionally, 40 percent of the proposals were submitted by researchers who had not been a primary investigator on … said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. …

DAN UDWARY: So Alison, I’m really excited today. We have, by far, I think, one of the most decorated and legendary … world. We used ships. We used land-based marine labs. We wrote cooperative grants with people in other countries. And … from the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we …

… genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The … 300+ students 800+ iNaturalist observations All MycoEd protocols, course materials and bioinformatics exercises are … analyses. The Mycocosm user interface is designed for use by mycologists and researchers, facilitating the transition …

… do engineering to improve the physical properties of a protein and make it easier to work with. But sometimes, what … in depth. So some of these that were initially identified by Russell Cox, like [INAUDIBLE]– DAN UDWARY: Explain to my … NARAYAN: Ah! OK. So some protein families are defined by their co-factor. And so, when I say flavin-dependent …

… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … beyond what each of these facilities could generate by itself.   Accepted projects must address or be otherwise … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope …

Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

… just– and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence … find gene clusters in cosmid libraries and sequence those by shotgun. We had a dozen people doing that to get that one … media. So you could take International Streptomyces Protocol media number 2, ISP2, and dilute it by a factor of …

Biodiversity Groups, and it’s this great program funded by the National Institutes of Health and the National … could then show that to collaborators and say, “This is a prototype. If you will help, we could do this in a more … and new developments in mass spectrometry hardware, software, new developments in NMR methods, ultra fast …

… project manager Miranda Harmon-Smith, who helps shepherd CSP projects along. …