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I was so impressed with the work everyone has done.” The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & …

… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality … metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, antibiotic resistance … fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …

… line of communication to the scientific community. Host Dan Udwary talks to luminaries in the field about …

… the future. So, then we were using these probes to look at host pathogen interactions mostly with like enteric … and heterologously express them? Is there like a great host that you could use if you can’t knock genes out? AARON … have this very restricted niche. And they do need broad host-range genetic tools so it’s more complicated than …

DOE's missions. … The DNA Synthesis Program plays a central role in advancing functional genomics, focusing on … fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …

… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … Nature Microbiol. 7(9):1419-1430. Ye et al (2022) The role of zinc in the adaptive evolution of polar … Natl Acad Sci U S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi …

… of background. My name is Dan Udwary. I – as well as my co-host, Alison Takemura, whose voice you’ll hear in a minute – … But here, in this first episode you’ll meet me, and my co-host, Alison. We’ll tell you some stories about natural … where this happened have a tendency to be susceptible to a fungal infection of rye grain – a specific fungus, Claviceps …

… on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … the pathogens evade a plant’s defenses. Understanding the role of transposons and 5mC in fungi could help researchers … rather than in genes, which suggests that 5mC may play a role in genome defense. Additionally, the team found a …

…   To understand virus-host dynamics, computation helps fill in what cultivation … are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a specific … to improving crop yields and a better understanding of the roles viruses and their host microbes play in nutrient …

… don’t know a lot about them by their mate, what their role in nature, how have they been selected for or how do … for what I wanted to do. Also studying evolution and the role of the secondary metabolites– ALISON TAKEMURA: And this … at the end to get the compound expressed in a heterologous host strain. DAN UDWARY: Yeah, sure. That’s very similar to …

… pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … Yeah, so that's a new JGI project. Just came out from a CSP this year. BETSY PARKINSON: Yes. DAN: So how long do you … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …