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Natural Prodcast Episode 23: Aaron Puri
And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that because we had these new genomes that JGI had sequenced that were of these bacteria …
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Extreme Scale De Novo Metagenome Assembly
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Plant Program
… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI …
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Building Sphagnum Genomic Resources
The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to … the ecosystem response to climate change. Through the CSP, researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale
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Kjiersten Fagnan
Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan was part of the Gordon Bell prize winning … Performance Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. …
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Soil pH influences the structure of virus communities at local and global scales
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Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
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