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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that point to the … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI … Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and collaboration …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … to 2016, in Florida alone this disease caused an estimated $4 billion in losses. Currently, ninety percent of Florida … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … history. In 2019, the countdown has begun to the June dedication event of the Integrative Genomics Building—the new … Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI …
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Natural Prodcast Episode 19: Bill Fenical
… basically unexplored until the 70s, and how diving was the catalyst of that. We also talk about his move to … underwater. But thankfully that worked out. And I spent 30, 40 years diving all over the world and bringing samples into … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … new features like a public API and ecosystem landing page, as well as the growth of different entities,  further …
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You Can Move, But You Can’t Hide
… elements (MGEs) are genetic entities that seek to replicate themselves and spread from cell to cell. Two of the … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … network approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and … more customized analysis, the JGI also participates in publication of results. …
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Metabolomics
… that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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A User-Centered Approach to Accessing JGI Data
… program,” he said. “If each kingdom submits the same category of data (key) for their files as a baseline, we can … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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