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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… these environmental samples,” said Matthias Hess, first author on the paper and now an associate professor and head …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … and identified many novel structure predictions,” said lead author on the paper Georgios Pavlopoulos, now a research … to predict new functions,” said  Nikos Kyrpides , senior author of the study and head of the JGI’s  Microbiome Data …
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The Case for Conservation
… the size of the next largest chromosome. As the study first author Carey put it, these sex chromosomes first evolved … of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the … U.S. Department of Energy under contract no. DE-AC02-05CH11231. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… of the Universidad de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore … Functional Genomics program at the JGI and a senior author on the paper. “The assumption that all the genes in a … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …
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Learning to Look
… isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 … Mart Krupovic of the Institut Pasteur, one of the study co-authors and an expert on inoviruses. “The result of this …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in the lab,” noted Stephen Nayfach, the study’s first author and research scientist in Nikos Kyrpides’  Microbiome … head of the  JGI Metagenome Program and senior author on the study elaborated on Nayfach’s comments. “This … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …
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Boosting Small Molecule Production in Super “Soup”
… chemical products,” said Jewett, one of the study’s senior authors. “But this has been done most commonly in … the sugar glucose to the products including ethanol and 2,3-butanediol (BDO). To do so, the yeasts received … student Blake Rasor. He and Yi, one of the study co-authors, have maintained a regular shipment schedule, with …
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Marine Microbe Contains Multitudes
… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … microbes tend to stay localized at different depths. But SAR324 can be found throughout the water column, from the warm, … pool. Summary To study the lifestyles of SAR324, lead author Dominique Boeuf and colleagues set sail on research …
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