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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP … of gene and genome function. Tapping into these functions allows researchers to use them for engineering …
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Tour the IGB
… the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy … The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large and complex genome whose …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … design for a proposal, we encourage you to contact the relevant JGI  Science Program leads to discuss available options. … stock of sequence verified clones if low number of variants, or pool of variants with sample sequencing to predict …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … funding of the JGI. There is no cost to the user and no granting of funds. All data is made publicly available in … spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and thematic scope of …
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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Overview of the MOSAiC expedition: Ecosystem
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A sweet spot in marine ecosystems
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