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… Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of … JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for … do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem …

… -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his graduate student … published paper with first author Amundson in the journal Microbiome . The work builds off a proposal approved through …

… the length and breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, … biology and hear from researchers who are applying genomic sequence information to BER funded activities of plant …

… the Plant Program is advancing research into plant-microbiome interactions, focusing on how environmental … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

… Brachypodium distachyon plant root exudates on the plant microbiome. This year, however, there was a new aspect to … from the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The … determine how mutations in plant transporter genes affect microbiome composition and plant growth. Under the …

… of Olpidium are obligate endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself doesn’t … LBVaV; genus Varicosavirus ) which may severely reduce crop yields. Like the typical chytrids and other … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …

… at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor … fungal guilds used to grow and metabolize nutrients. They sequenced all of the RNA found in soil samples, and …

… approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient to …