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2024 Progress Report
… secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community … outreach activities and hosting visiting scientists at all stages of their careers. Our staff have organized, chaired …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in coastal sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior … paradigm of what constitutes a bacterial cell and advances microbial research.” One Giant Bacterium, Multiple Research …
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Game On: High School Students Drive Everglades Metagenomics Study
… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … partnership. The class decided to do an environmental microbial community (metagenomic) soil study in an untouched region of the …
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David Goodstein
… in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference … structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an updateable transcriptome …
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Making a Lichen Together
… could help inform efforts at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens … by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint Genome … DOE Office of Science under Contract No. DE-AC02-05CH11231. The work of MP, DL and SSM was supported by the U.S. DOE …
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Ian Blaby
Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – … metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool … Frontiers in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling Cre-lox …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also … known fossil record of land plants and evolved in early microbial biocrust environments.     … The U.S. Department …
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Axel Visel
EM (2014).  Stop codon reassignments in the wild.   Science 344:909-13 Nord AS, Blow MJ, Attanasio C, Akiyama JA, Holt A, … Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). Metagenomic discovery of biomass-degrading genes and genomes …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, …
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Crysten Blaby-Haas
Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 NIH NRSA Postdoctoral Fellowship (F32), 2012 – 2015  Bright Futures Academic Scholarship, 2002 … AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, …
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Integrating Experimentation with Data
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