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Hi-C metagenome sequencing reveals soil phage–host interactions
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Draft genome sequence of Gleimia europaea DSM 26657
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An Integrated Dataset to Understand Ecosystem Interaction
… By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding their … data set will help identify how different elements of the ecosystem interact and respond to changes in the … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … means most genes are found as multiple copies across the chromosomes. In a follow-up study , researchers focused on …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … all methane emissions to livestock and roughly one-third of human-created methane emissions actually come from livestock … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Cultivating Symbiotic Antarctic Microbes
… The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … from the Rauer 1 and Club lakes in East Antarctica and enriched for native microbes. Metagenomes from enrichment …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, … / method does the JGI use to pre-screen DNA for enrichment? A:  The JGI uses liquid chromatography–mass …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … The planet’s resources are being stretched by a growing human population and increasing demand for agricultural … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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JGI at the AGU Fall Meeting
… Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … “Microscopic time travelers: A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe … 4pm CST Convention Center, Poster Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an organism’s …
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