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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups …
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JGI at the AGU Fall Meeting
… on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential in … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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JGI Announces 2026 New Investigator Portfolio
… Susanne Wilken, Jing Yuan, and Brittany N. Zepernick.    Each year, the JGI solicits novel research projects from PIs … including metagenomics, metatranscriptomics and genome assembly to investigate microbial and plant metabolism across diverse ecosystems — …
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The microbial ecology of permafrost
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Microbial Diversity for Biotechnology
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. … and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single amplified …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … being advanced as a potential therapy for both genetic and complex disease. Finally, gene editing is being used to … few exceptions, the Cas14 proteins identified were found within the archaeal superphylum DPANN, named by a JGI-led …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously … identity, as well as the roles played by neighboring cells in these processes.   One of the study’s co-authors … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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