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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … plant’s traits and genetic diversity,” said John Lovell, an evolutionary biologist at HudsonAlpha and first author of … of switchgrass across the garden sites depended on the origin or collection location of the individual switchgrass …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … The Impact The initial analysis highlights abundances of gene annotations that provide insights into the nutrients …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been … is based on their records of scientific achievement and original contributions that have advanced microbiology. … from previously understudied clades, establishing their evolutionary relationships and leading to the discovery of …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those … three from each of the common bean’s two points of origin in Central and South America.   “Technology was …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide …
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