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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Boosting Small Molecule Production in Super “Soup”
… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As … the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their …
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Help from Citrus’ Bitter, Hardier Cousin
… genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for … annotating and analyzing the genome in order to find the genetic traits responsible for  P. trifoliata ’s hardiness, … Fred Gmitter, a UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR could … surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in … yet, while they are found everywhere, comparatively little is known about viruses, much less those considered large and … expanded 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic Reprogramming a …
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Interactions among triphenyltin degradation, phospholipid synthesis and membrane characteristics of Bacillus thuringiensis in the presence of d-malic acid
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Training the Next Generation of Talent
… Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint … could be considered.” Olmstead’s project focused on the genetic mechanisms of chemotaxis in the Arabidopsis …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their … environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In …
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A Plant Root Atlas for Tracking Developmental Trajectories
… team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler … atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and … Berkeley National Laboratory (Berkeley Lab). “This represents the largest integration of single-cell datasets in …
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