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… Microbial cells infected by viruses undergo metabolic reprogramming. The … The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … an experimental approach with a marine phage-host model to study virus-host-nutrient interactions. In  their study , …

… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. sinensis, and … history and perennial lifecycle makes it important to study directly. The large and complex genome of M. sinensis …

… to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included the discovery of candidate genes that confer …

… data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call … Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at …

… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … https://phycocosm.jgi.doe.gov ) to explore algae and other eukaryotes, where we have the Oomycetes node ( … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the entire data life cycle through resources including the JGI portals, and our broader data ecosystem. …

… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE … researchers with a powerful addition to their toolkit to study gene function. As a demonstration, the researchers … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …

… Harnessing BER-funded data resources, researchers built an … an interactive browser that allows other researchers to study the genomes and predict the metabolic abilities of … also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …

… By leveraging new tools and large-scale data mining, JGI researchers … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …

… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … order to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the … wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than …

… bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial … to have evolved from a parasitic interaction with their soil fungus host, Rhizopus microsporus . Researchers found … reliant on the continued presence of the bacteria. By studying the Rm-Burkholderia symbiosis model, the team was …

… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … I will spend the first four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of … how to sharpen the CRISPR-Cas9 tool for a non-conventional eukaryotic host — an approach, the team says, that could be …