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Microbial communities associated with sympagic and planktonic habitats during a polar vortex influencing the North American Great Lakes Basin
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … shrub willow have been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene … with Y chromosomes in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow …
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Better Genome Editing for Bioenergy
… team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The … is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning them alongside CRISPR-Cas9 …
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An Integrated Dataset to Understand Ecosystem Interaction
… poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how healthy … outlined in  Scientific Data connects molecular features to large ecosystem-level processes for the first time. By … and Environmental Research. Oak Ridge National Laboratory is managed by UT-Battelle, LLC, for the U.S. Department …
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Training the Next Generation of Talent
… was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the … JGI. After graduating from UC Merced, this experience will help them direct their career trajectories. Finally, we … microbiome, particularly, how bacteria can be driven toward compounds produced by the plant roots. He is now working in …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … where you can browse the genetic blueprints of these photosynthetic organisms. PhycoCosm is one of the largest data … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … additional gene function descriptions. This resource also helps in performing cross-species comparative … 12 plants, which are JGI Flagship Plants, mostly related to biofuels and feedstocks. And then we expanded that to …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no … the process can result in other end products including biofuels and other bioproducts. Summary Researchers at the …
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JGI Scientists Pen Genome Watch Articles
… Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of … Institute in the UK — a nonprofit that was founded to help sequence the human genome. Today, the Sanger Institute … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on …
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