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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes … and unknown majority of microbes in, on and around the planet–through techniques including single-cell genomics and …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops … (CAG), he sees his role as using the substrate provided by LBNL, where possible, and enriching it, where necessary, …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … approach that focused on the gene rich part of the genome by harnessing information from a sequenced related species – … and maize, sugarcane can grow on nutrient-poorer soils and does not need to be planted annually. The modern sugarcane …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment activities. For some …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. These small plastic growth chambers let researchers … around the world compare their work consistently. And EcoFABs also work well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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Decoding Yellowstone’s Microbial Mats
… began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Dr. Ben Cole and Dr. Axel Visel led to being co-advised by Dr. Tanja Woyke and additionally mentored by members of …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … Physics Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research … the origin, evolution, and diversity of plants and animals by combining computational genome analysis, sequence-based …
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Ben Bowen
… Dr. Bowen’s expertise in spectral alignment, molecular networking, chemoinformatics, and bioinformatics facilitates … impactful scientific discoveries, supporting the DOE’s Biological and Environmental Research user community … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – …
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