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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last … have used culture-independent approaches to gain insight into the  genomes of giant viruses. In a new review, …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… tool called geNomad that identifies and classifies mobile genetic elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new …
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An Addiction Crucial to a Fungus’ Reproduction
… organisms (symbionts) are transmitted between host generations, researchers investigated the role that bacteria … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as … are potential sustainable sources of alternative fuels, so understanding fungal-bacterial relationships can shed light …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Game On: High School Students Drive Everglades Metagenomics Study
… credits her high school teacher with inspiring her to get into science and wanted to pay it forward. Defining a … images from Google maps to plan their route, and had to adapt when they noticed while collecting the samples on … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… impressive amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … has allowed the research team to associate climate adaptations with switchgrass biology. Switchgrass has a large …
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Soil virus offers insight into maintaining microorganisms
… AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … chitosanases originated in bacteria before being modified into virus-specific versions through genetic drift and … soil viruses and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and …
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Thai Dao
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Axel Visel
… where he developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of vertebrate genomes, which led …
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