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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of Lawrence … collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer professional development program for current faculty. Applying faculty members may invite up …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. The planet’s microbial diversity … world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … a gene related to seed dispersal in wild populations for the first time. I-Min Chen ,  Natalia Ivanova ,  Nikos … , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that led to the …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … especially here in California. The opportunity to tap into the diverse talent that UC Merced has is tremendous for … Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who mentored 2018 intern Akshay Paropkari, …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science … that address these issues. Check the scientific program for relevant posters. …
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New and Improved: Eucalyptus Reference is Now Accessible
… improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | … to the efforts of the  U.S. Department of Energy (DOE) Office of Science Biological and Environmental Research …
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