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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … — so researchers can easily explore the evolutionary and functional relationships among the different algae. …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … green algal genomes using Chlamy as a reference for functional annotation, including Chromochloris zofingiensis …
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Triggering Morel Fruiting
Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in … scientists access to multiple user facilities through a single research proposal: Maximize Your Research by … of Arizona (lightning talk): “Subsurface stable isotope approaches for resolving nitrogen transformations in the …
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A Community Resource for Secondary Metabolite Researchers
Collaboratory encourages user engagement. The Science In addition to the core set of "primary … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. … SMC is the most comprehensive BGC database …
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Approved Proposals
Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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JGI announces 2024 New Investigator portfolio
The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from … a list of researchers whose proposals were accepted for 2024. Harnessing the JGI’s  resources, these researchers …
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IMG/VR
… metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new … up genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational biologists, … in solving DOE’s most challenging problems. … PhD Cell Biology. Duke University MS Developmental Biology, … metagenome binning software … Education … Selected Publications … Software …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth … to be where we’re going to level off. And that’s in a single lifetime, right? Or maybe two generations. And so, … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …
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JGI Announces 2025 New Investigator Portfolio
Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any … a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will …
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