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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … chromosomal hoarding had been thought to be the result of multiple whole-genome duplications. The process of … to its gene hoarding and those long genes. And gene family analysis showed that genes directing development of …
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Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” … 12-39. “Overall,” the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … power of genomics and molecular characterization offered at multiple user facilities stewarded by the DOE’s Office of … was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system v.7.0: content updates and new features. … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Mateus Fiamenghi
Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, underground … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, underground … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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