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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and … & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a …
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The Mobilome in the Mire
… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … move between organisms. But now, deep sequencing and new analysis methods are bringing this mobilome into light, and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform … is open year-round, but proposals submitted by September 21, 2020, will be included in the next review. Q&A from the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University … also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data via …
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Mining Metagenomes for Cas Proteins
… Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … acids (aa) in size, half that of previously known class 2 CRISPR enzymes that are typically 950—1400 aa. They were … proteins and were also found next to cas1 genes. Further analysis led to the identification of a new family of Cas …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … Berkeley National Laboratory (Berkeley Lab). In their analysis, they found the salinity changes led the algae to …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … “She understood that it was a bacterium belonging to the genus Thiomargarita ,” Gros noted. “She named it Ca. …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes this … – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … C. zofingiensis on Phytozome …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … is estimated to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, …
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