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David Goodstein
With a background in experimental and computational surface … and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics … Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile for a not very well …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes …
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JGI on the 2020 Highly Cited Researchers List
Congratulations to the 2020 Highly Cited Researchers at the JGI! … fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC … Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … could be considered.” Olmstead’s project focused on the genetic mechanisms of chemotaxis in the Arabidopsis …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first …
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Tanja Woyke
After studying the mechanism of action of antifungal natural … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business … User Programs … Education … Awards and Service … Selected Publications …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … generating their  genome sequences to improve breeding by genetic improvements. Apomixis is asexual reproduction …
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