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Filling in the Plant Tree of Life
… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the … everyday activities, striving for sustainability in lab spaces as well as offices. These efforts dovetail into … now IGB-wide ZERO Waste Initiative began its most ambitious project yet: a special recycling program to recycle lab …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Simpson assembled a team of researchers working in this SIP space to formalize metadata reporting and data labeling for …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …
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Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes
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Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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Optimizing de novo genome assembly from PCR-amplified metagenomes
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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