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Reactive iron, not fungal community, drives organic carbon oxidation potential in floodplain soils
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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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Variability in depth-mediated shifts in methanogen and methanotroph communities across tropical Andean mountain peatlands
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The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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Ian Blaby
… design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  … Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest … previous NeLLi Symposia. In this 2025 Symposium, we will showcase the latest research on the evolution of cellular …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … But scientists have wondered exactly how the microbial community carries out its helpful metabolism: who’s … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades …
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Leadership
… talent management, and convening of advisory committees to guide the direction of programs and initiatives to enhance the JGI’s preeminence as a national resource. Members report to …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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