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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … one of the first cross-kingdom spatially-resolved transcriptomics studies to date. This paper  is the cover article for … understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, underground …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of the largest data repositories of its kind, with an interactive browser that allows algal scientists and enthusiasts … and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of the largest data repositories of its kind, with an interactive browser that allows algal scientists and enthusiasts … and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan …
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Dan Rokhsar
… as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Axel Visel
… tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral training at … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, 563. May D, Blow MJ, Kaplan T, McCulley DJ, …
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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … evolution of life on Earth, and led to the development of multicellular organisms. Not all bacterial lineages … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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David Goodstein
… group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, NY … regions of interest and gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial … Woyke and her colleagues harnessed the JGI’s single cell genomics capabilities to assemble, identify, and characterize …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she … User Programs … Education … Awards and Service … Selected Publications …
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