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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … and  B. stacei , as well as multiple lower quality genome assemblies for all three grasses. With these datasets, …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer … of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of … at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched off. Over … years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During those days, they were …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a … agencies are emphasizing data integration to support the exploration of new, cross-domain research questions. …
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Len Pennacchio
Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … areas. Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US …
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Matt Blow
… function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs … Free-Living Growth and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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