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… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … scientific contributions—including sequencing services and analysis—to participants. Over the past two years, Myco-Ed … environment designed for reproducible computational biology analysis. KBase also supports  MICROnet (Microbiomes In …

… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … transitioned to the symbiotic lifestyle. The Impact The analysis enables researchers to understand how plants and …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … came up with this new method, Session mentioned that the analysis for determining the evolutionary history of … small possibility that something could be missing from the analysis (due to extinction or you didn’t sample it). But …

… Miscanthus  sequence offers insights into benefits of polyploidy and … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … crops such as sugarcane and sorghum. The M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. …

… the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … focused on the discovery, development and commercialization of novel production organisms and fermentation processes for … on secondary metabolites. He is also on the Leadership Team of the National Microbiome Data Collaborative and served as …

… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics … Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab …

… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … bacteria, archaea and fungi. We thought this kind of analysis would provide a framework for the evolution of this … addition to providing metagenome mining for computational analysis of the AT enzyme family, the JGI provided DNA …

… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, … the lichen partners. This genomic and transcriptomic analysis has opened the door for more incisive …

… annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … phenotype using a strategy called reciprocal hemizygosity analysis via sequencing (RH-Seq). Strains of S. cerevisiae … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …

… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most abundant in the … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … varieties that have high productivity across a range of environments is becoming increasingly important for food, … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy …

… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … global metagenomes (within IMG).  The Impact The initial analysis highlights abundances of gene annotations that … constricting metabolic activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse …