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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Microbial communities associated with sympagic and planktonic habitats during a polar vortex influencing the North American Great Lakes Basin
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The … these fungi use to break down wood, and compares genetic diversity between cultivated and wild shiitake populations. … pangenome analysis showed significantly more genetic diversity in wild Lentinula species compared with farmed …
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JGI Scientists Pen Genome Watch Articles
… with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea … three Genome Watch articles. “Given the great expertise in microbial genomics and metagenomics of the … so far selected the authors of these pieces to represent diversity in research area, gender, as well as stage of …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, … hot springs, an extreme environment with low genetic diversity that would help narrow down potential sources of … with that, we have a much less biased view into biological diversity. You don’t have tunnel vision anymore, only seeing …
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DAS Tool for Genome Reconstruction from Metagenomes
… genomes, particularly from incredibly complex soil microbial communities, is crucial to understanding how these … improving methods for isolating and characterizing entire microbial genomes from sequences generated from … team applied it to assemblies from both simulated and real microbial communities and examined the bins obtained. The …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… customize the crop for additional end products. The genetic diversity within this set of plants, each with a … to make connections between the plant’s traits and genetic diversity,” said John Lovell, an evolutionary biologist at … Multiple collection methods were applied to gather the diversity of switchgrass plants represented in the gardens. …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Rex Malmstrom
… that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 (1), 4881 …
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JGI@25: Solving the Mystery of the Missing Oil
… also helped track and characterize the shifting waves of microbial communities involved in removing different … with the JGI successfully simulated how successive waves of microbial populations degraded the dispersed oil.   Terry …
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JGI@25: From Life at the Extremes to Editing Genomes
… Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine … Mountain, CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna …
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