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Introducing New Members of the JGI User Executive Committee
JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced … noted, “I would also like to offer my insights in promoting diversity, equity and inclusion (DEI) in STEM disciplines to …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … User Facility, and others like it, are uncovering the true diversity of the fungal kingdom. The abundance of fungal …
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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …
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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with … lifestyles found in the Antarctic lakes and offers a genetically-tractable model system that could help …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their … below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed … tool for microbial ecologists to learn more about the diversity of microbial enzymes, which could have a plethora …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the … are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … than any individual genome highlighting the fact that the genetic information in a single reference genome is … Plant Biology (Austria); Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to … production and natural fertilizers. By understanding the genetic and metabolic pathways involved in stress responses, …
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Building Sphagnum Genomic Resources
Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can … and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum growth and …
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