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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge
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Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale …
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JGIota: Looking Back at Methane-Making Microbes
… and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us … producing things like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand Agricultural …
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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … things like biomass and  biofuels . However, AMF and the microbial communities they inhabit are notoriously difficult … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Waiting to Respire
… of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … At the same time, working with researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration … Transcriptomes of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging …
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Genome sequence of Burkholderia mimosarum strain LMG 23256T, a Mimosa pigra microsymbiont from Anso, Taiwan
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