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Enlarging Windows into Understanding Gene Functions
… affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the tube look like a … National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … on how the JGI-UC Merced Intern partnership had become a “model” of sorts at the Lab. “This project represents part of …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Silver age of GOLD introduces new features
… OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 … making curated microbiome metadata that follows community standards freely available, and enabling large-scale … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Supercharging SIP in the Fungal Hyphosphere
… probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in … National Laboratory was conducted under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work …
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific …
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a set of "secondary … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … U.S. Department of Energy Joint Genome Institute (https:// …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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