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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day … to be where we’re going to level off. And that’s in a single lifetime, right? Or maybe two generations. And so, … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Alabama A&M Interns Access An Abundance of Knowledge
… bring students to the JGI for research training experience. Enabled by the DOE RENEW initiative, undergraduate student … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … experience in molecular biology and plant functional genomics, because this work is essential for improving crop …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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JGI@25: The Little Alga That Could
… energy and environmental challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … C. reinhardtii on PhycoCosm …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past … of microbes through forest canopies.  The Impact This work, enabled in part by the U.S. Department of Energy (DOE) Joint … site exerting the stronger influence. Although no single environmental variable explained these differences, …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)
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Comparative transcriptomics provides insights into molecular mechanisms of zinc tolerance in the ectomycorrhizal fungus Suillus luteus
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for … one DOE Office of Science National User Facilities in a single project. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for … of Science National User Facilities , with the stroke of a single proposal. The next step for the team was to try to …
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