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Microbial communities and biogeochemical functioning across peatlands in the Athabasca Oil Sands region of Canada: Implications for reclamation and management
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of … awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado State … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … some duplicates, to sort through in order to form a single cohesive image. An approximately nine billion base … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … primary focus — replicating itself.  Chitin is found in the cell walls of fungi and the exoskeleton of insects. It is … why these AMGs exist in the first place, and what function other AMGs may serve.  The work was enabled in part …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell … Publications … Award, National Cotton Council 2009 Friday Evening Lecturer, Marine Biological Laboratory 2000 John Simon …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … collaboration with the JGI Algal Program, which explores genomics of algal diversity and biology to support basic … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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