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Mateus Fiamenghi
Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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Prokaryotic community profiles at different operational stages of a Greek solar saltern
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide …
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Tour the IGB
Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each … to advancing the frontiers of environmental and energy genomics.  For more information about the science depicted, …
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University of California, Merced Internship Program
Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to include … than 80 UC Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our …
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Partners
The JGI leverages its existing partnerships and develops others providing complementary … our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a … begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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