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Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
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Potential Biocontrol Activities of Populus Endophytes against Several Plant Pathogens Using Different Inhibitory Mechanisms
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Functional investigation of five R2R3-MYB transcription factors associated with wood development in Eucalyptus using DAP-seq-ML
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our … all sorts of other intermediate phenotypes where plants are using a little bit of both of the pathways.  ALISON: … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … bacterial RNA polymerases are made up of a core enzyme complex as well as a sigma factor. While all bacteria encode …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, with … featured keynote speeches from Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected … and discuss some of the current challenges faced by those using metagenomics to try to understand the far-reaching …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our … the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI announces 2025 Functional Genomics awardees
… Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who … call , we look for projects that will leverage the JGI's DNA synthesis and omics capabilities to enhance … transcriptional network mapping, developing microbial systems to convert renewable feedstocks into advanced …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples collected at these gardens. Building off this …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … and metatranscriptomes. To lower barriers to accessing and using geNomad, the JGI partnered with the NMDC to integrate …
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