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First Monoploid Reference Sequence of Sugarcane
… genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have … species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … and ZyGoLife in recent years. With the much more extensive taxonomic and genetic sampling, our study confirmed the …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with … these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles on … This work was supported by the Australian Research Council (DP150100244) and the Australian …
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Doubling Down on Known Protein Families
… researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a … only 7% of protein families were shared across all eight environmental categories. Instead, families preferred a … them because they are very specific to that habitat.”  Taxonomic analysis found that the majority of these protein …
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Team Science Reveals Important Protein in Poplar
… (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, and disease resistance.  The … crops. The trees can be bred to be more resistant to environmental stresses such as nutrient-poor land, drought …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. … at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Exometabolomic Analysis of Cross-Feeding Metabolites
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Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas
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