Results

Integrating Experimentation with Data
… Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their joint meeting! … JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy and environmental science. They provide the scientific community access to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … and adjusting the environmental conditions to encourage their growth. In this instance, vegetable oil was …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the …
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JGI-KBase Panel at SACNAS
… scientific contribution they make, whether as part of a course or internship, and before ever publishing a research … of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their contributions to science. A panel of DOE researchers, program managers, and …
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Sequencing Submission Requirements for DNA Synthesis
… Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …
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JGI@25: Solving the Mystery of the Missing Oil
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in …
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JGI@25: Roots of a Mutualist Relationship
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship …
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